usefragsph not on There are 24 ligand heavy atoms Ligand center of coords (x y z): 20.3322916666667 64.4505 17.6503333333333 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 2350 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1067 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1067 Number of spheres polar: 228, nonpolar: 730, out of current total: 1067 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 10.34294 30.28180 54.45353 74.43779 7.68629 27.64874 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 287 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 232 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 182 Spheres center of coords (x y z): 18.0893693406593 65.0996613736264 14.9623862087912 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 7.03260337021867 Final number of output spheres is: 45 Number of polar spheres: 15 Number of nonpolar spheres: 26 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 24