usefragsph not on There are 19 ligand heavy atoms Ligand center of coords (x y z): 19.7396315789474 63.7989473684211 17.7161052631579 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1821 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 988 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 988 Number of spheres polar: 198, nonpolar: 716, out of current total: 988 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 9.73973 29.64380 53.94690 73.79855 7.73751 27.70770 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 264 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 222 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 189 Spheres center of coords (x y z): 19.0709733333333 64.8998985714286 16.6081883068783 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.74123815284159 Final number of output spheres is: 45 Number of polar spheres: 18 Number of nonpolar spheres: 24 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 19