usefragsph not on There are 40 ligand heavy atoms Ligand center of coords (x y z): 73.4034 -3.26235 -0.2821 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 2712 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1077 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1077 Number of spheres polar: 253, nonpolar: 693, out of current total: 1077 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 63.43557 83.36437 -13.20874 6.57464 -10.26818 9.44172 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 295 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 238 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 220 Spheres center of coords (x y z): 73.5538656818182 -1.03423877272727 -2.36773918181818 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.30066283700716 Final number of output spheres is: 45 Number of polar spheres: 6 Number of nonpolar spheres: 38 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 40