usefragsph not on There are 36 ligand heavy atoms Ligand center of coords (x y z): 11.7747222222222 48.3127777777778 61.1271666666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 2019 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1027 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1025 Number of spheres polar: 208, nonpolar: 641, out of current total: 1025 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 1.84395 21.72030 38.34074 58.29932 51.14212 71.11441 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 283 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 232 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 224 Spheres center of coords (x y z): 14.328318125 50.8218361160714 61.3203524107143 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.52470079305692 Final number of output spheres is: 45 Number of polar spheres: 3 Number of nonpolar spheres: 40 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 36