usefragsph not on There are 21 ligand heavy atoms Ligand center of coords (x y z): 27.8465238095238 -7.95966666666667 9.62180952380952 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1123 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 361 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 361 Number of spheres polar: 147, nonpolar: 180, out of current total: 361 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 17.86685 37.54531 -16.30534 1.81400 -0.28534 19.57825 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 119 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 89 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 55 Spheres center of coords (x y z): 27.9021803636364 -7.77366490909091 9.94350345454545 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 1.7571450485155 Final number of output spheres is: 45 Number of polar spheres: 15 Number of nonpolar spheres: 27 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 21