usefragsph not on
There are 25 ligand heavy atoms
Ligand center of coords (x y z): -2.3948 -7.92588 25.2628
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1068
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 419
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 419
Number of spheres polar: 146, nonpolar: 215, out of current total: 419
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -12.33755 7.39570 -16.62333 2.00448 15.27833 35.07418
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 205
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 178
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 115
Spheres center of coords (x y z): -2.71547834782609 -8.11818182608696 25.722428
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 2.11134999201355
Final number of output spheres is: 60
Number of polar spheres: 19
Number of nonpolar spheres: 25
Number of spheres that are near neither polar nor nonpolar receptor atoms: 16
Final number of spheres that are from crystallographic ligand: 25