usefragsph not on There are 27 ligand heavy atoms Ligand center of coords (x y z): -2.73937037037037 -8.19351851851852 24.6844074074074 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1265 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 429 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 429 Number of spheres polar: 156, nonpolar: 233, out of current total: 429 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -12.71660 7.14115 -18.16296 1.71490 14.70001 34.67518 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 130 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 100 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 62 Spheres center of coords (x y z): -2.91527516129032 -8.11408080645161 24.3172516129032 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 1.76367056613683 Final number of output spheres is: 45 Number of polar spheres: 10 Number of nonpolar spheres: 33 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 27