Distance from surface specified: 1.80 There are 27 ligand heavy atoms Ligand center of coords (x y z): -3.19062962962963 -8.58755555555556 24.5886666666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 15742 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (14 angstroms): 12933 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<2 angstroms): 12423 Number of spheres polar: 7081, nonpolar: 4254, out of current total: 12423 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -17.18780 10.79860 -22.57480 5.41200 10.59380 38.58460 Number of spheres after removing spheres too close to each other (approximately <1.4 angstroms): 1742 Number of spheres after second pass removing spheres absolutely <0.9 from each other: 745 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 163 Final number of output spheres is: 163 Number of polar spheres: 75 Number of nonpolar spheres: 74 Number of spheres that are near neither polar nor nonpolar receptor atoms: 14 Final number of spheres that are from crystallographic ligand: 27