There are 27 ligand heavy atoms Ligand center of coords (x y z): -3.19062962962963 -8.58755555555556 24.5886666666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 15742 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (12 angstroms): 8813 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 8793 Number of spheres polar: 5054, nonpolar: 3078, out of current total: 8793 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -15.18520 8.80800 -20.58340 3.41180 12.59220 36.58860 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 1074 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 405 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 104 Final number of output spheres is: 104 Number of polar spheres: 40 Number of nonpolar spheres: 59 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 27