usefragsph not on There are 18 ligand heavy atoms Ligand center of coords (x y z): 10.2826111111111 46.1651111111111 19.7928888888889 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 845 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 528 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 528 Number of spheres polar: 202, nonpolar: 220, out of current total: 528 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 0.31122 20.20788 36.16529 56.11554 10.84819 28.60598 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 183 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 140 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 132 Spheres center of coords (x y z): 11.2237211363636 46.6808215909091 17.1489236363636 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.14215406509907 Final number of output spheres is: 45 Number of polar spheres: 23 Number of nonpolar spheres: 17 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 18