usefragsph not on There are 18 ligand heavy atoms Ligand center of coords (x y z): 44.7713888888889 14.0943333333333 2.23455555555556 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 801 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 498 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 498 Number of spheres polar: 162, nonpolar: 229, out of current total: 498 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 34.86271 54.75388 4.36473 24.04771 -7.21944 5.81100 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 263 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 227 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 217 Spheres center of coords (x y z): 44.9761718894009 12.6514058986175 -0.764445069124424 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.01034006214527 Final number of output spheres is: 60 Number of polar spheres: 33 Number of nonpolar spheres: 27 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 18