usefragsph not on
There are 39 ligand heavy atoms
Ligand center of coords (x y z): 9.66238461538461 18.3832051282051 9.11505128205128
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1231
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 706
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 691
Number of spheres polar: 219, nonpolar: 228, out of current total: 691
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -0.31044 19.62905 9.93426 28.30328 -0.84904 19.01627
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 414
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 371
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 356
Spheres center of coords (x y z): 10.0469558707865 18.4501932022472 8.86666941011236
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.48691610963717
Final number of output spheres is: 60
Number of polar spheres: 17
Number of nonpolar spheres: 23
Number of spheres that are near neither polar nor nonpolar receptor atoms: 20
Final number of spheres that are from crystallographic ligand: 39