usefragsph not on There are 43 ligand heavy atoms Ligand center of coords (x y z): 19.1938372093023 11.5926744186046 42.114511627907 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1837 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 889 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 866 Number of spheres polar: 221, nonpolar: 394, out of current total: 866 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 9.19535 28.35748 1.67618 21.45611 32.16247 49.46208 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 334 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 275 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 268 Spheres center of coords (x y z): 18.228270858209 10.3242647014925 40.9750570895522 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.18442911896624 Final number of output spheres is: 45 Number of polar spheres: 11 Number of nonpolar spheres: 29 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 43