usefragsph not on There are 24 ligand heavy atoms Ligand center of coords (x y z): 24.9612083333333 22.6802083333333 0.637041666666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 659 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 487 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 485 Number of spheres polar: 154, nonpolar: 201, out of current total: 485 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 15.21578 34.40052 13.16236 32.67201 -5.81984 10.15285 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 277 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 243 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 199 Spheres center of coords (x y z): 24.8846229648241 21.0931256281407 -0.637561005025126 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.92287605598673 Final number of output spheres is: 60 Number of polar spheres: 17 Number of nonpolar spheres: 36 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 24