usefragsph not on
There are 53 ligand heavy atoms
Ligand center of coords (x y z): 31.151679245283 28.6572830188679 21.4926226415094
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1402
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 634
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 631
Number of spheres polar: 163, nonpolar: 229, out of current total: 631
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 19.97400 41.13408 18.75322 38.51871 12.71814 29.25790
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 407
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 360
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 358
Spheres center of coords (x y z): 31.1408184916201 28.2638388826816 20.1364598603352
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 4.93379487861499
Final number of output spheres is: 60
Number of polar spheres: 17
Number of nonpolar spheres: 31
Number of spheres that are near neither polar nor nonpolar receptor atoms: 12
Final number of spheres that are from crystallographic ligand: 53