usefragsph not on There are 26 ligand heavy atoms Ligand center of coords (x y z): 34.5930384615385 27.7410384615385 20.7068846153846 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 893 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 578 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 572 Number of spheres polar: 220, nonpolar: 205, out of current total: 572 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 24.62817 44.55000 17.83454 37.51740 11.10105 28.75128 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 350 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 305 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 278 Spheres center of coords (x y z): 33.9036690647482 27.9881317266187 18.3723157553957 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.30516092184139 Final number of output spheres is: 60 Number of polar spheres: 22 Number of nonpolar spheres: 23 Number of spheres that are near neither polar nor nonpolar receptor atoms: 15 Final number of spheres that are from crystallographic ligand: 26