usefragsph not on There are 43 ligand heavy atoms Ligand center of coords (x y z): 29.6479534883721 29.7060465116279 19.657976744186 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1331 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 709 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 703 Number of spheres polar: 207, nonpolar: 240, out of current total: 703 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 19.72254 39.45100 19.77121 39.64633 11.01949 28.78489 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 435 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 389 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 385 Spheres center of coords (x y z): 29.4675670649351 29.0601939220779 18.8167213766234 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.11048741285872 Final number of output spheres is: 60 Number of polar spheres: 22 Number of nonpolar spheres: 29 Number of spheres that are near neither polar nor nonpolar receptor atoms: 9 Final number of spheres that are from crystallographic ligand: 43