Distance from surface specified: 1.80 There are 17 ligand heavy atoms Ligand center of coords (x y z): 45.7562941176471 14.7804705882353 2.52294117647059 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 9171 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (14 angstroms): 8378 WARNING: removing a crystallographic sphere that is distance 1.86441572617268 angstroms from closest receptor atom Number of spheres after removing too far (>7 angstroms) and too close to receptor (<2 angstroms): 8066 Number of spheres polar: 4525, nonpolar: 2871, out of current total: 8066 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 31.75660 59.71880 0.78720 28.77540 -9.29120 14.75700 Number of spheres after removing spheres too close to each other (approximately <1.4 angstroms): 1141 Number of spheres after second pass removing spheres absolutely <0.9 from each other: 678 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 668 Spheres center of coords (x y z): 45.4861269461077 14.8214344311377 -1.29103113772455 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 11.9036244473755 Final number of output spheres is: 200 Number of polar spheres: 114 Number of nonpolar spheres: 83 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 16