There are 17 ligand heavy atoms Ligand center of coords (x y z): 45.7562941176471 14.7804705882353 2.52294117647059 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 9171 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (12 angstroms): 6697 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 6697 Number of spheres polar: 3994, nonpolar: 2207, out of current total: 6697 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 33.76320 57.74840 2.79140 26.77700 -9.29120 14.48260 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 841 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 526 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 513 Spheres center of coords (x y z): 46.4393828460039 13.9420109161793 -1.60525068226121 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 10.4125272757402 Final number of output spheres is: 120 Number of polar spheres: 66 Number of nonpolar spheres: 54 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 17