usefragsph not on There are 22 ligand heavy atoms Ligand center of coords (x y z): -1.59131818181818 62.6982272727273 2.97531818181818 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 887 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 496 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 493 Number of spheres polar: 147, nonpolar: 222, out of current total: 493 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -11.52582 8.19361 52.70111 72.66579 -6.20065 9.78957 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 189 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 161 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 143 Spheres center of coords (x y z): -2.75463706293706 65.2456932867132 0.404334825174825 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.25384621508611 Final number of output spheres is: 45 Number of polar spheres: 15 Number of nonpolar spheres: 26 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 22