usefragsph not on There are 33 ligand heavy atoms Ligand center of coords (x y z): 22.0375454545455 31.4644545454545 15.3130909090909 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1138 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 615 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 604 Number of spheres polar: 121, nonpolar: 314, out of current total: 604 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 12.04002 32.02020 21.48026 41.40458 7.90690 24.99855 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 231 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 202 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 181 Spheres center of coords (x y z): 22.0428417127072 30.4698116574585 14.2079644198895 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.13755699699054 Final number of output spheres is: 45 Number of polar spheres: 10 Number of nonpolar spheres: 31 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 33