usefragsph not on There are 33 ligand heavy atoms Ligand center of coords (x y z): 22.0375454545455 31.4644545454545 15.3130909090909 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1138 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 615 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 604 Number of spheres polar: 121, nonpolar: 314, out of current total: 604 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 12.04002 32.02020 21.48026 41.40458 7.90690 24.99855 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 351 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 307 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 272 Spheres center of coords (x y z): 22.4007802205882 30.7207701102941 14.5256484191176 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.92845624126049 Final number of output spheres is: 60 Number of polar spheres: 18 Number of nonpolar spheres: 37 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 33