usefragsph not on There are 46 ligand heavy atoms Ligand center of coords (x y z): 18.9140217391304 32.5562173913044 14.5296739130435 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1259 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 706 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 687 Number of spheres polar: 142, nonpolar: 354, out of current total: 687 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 8.52500 28.67741 22.60323 42.43124 8.00350 22.32700 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 270 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 222 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 46 Spheres center of coords (x y z): 18.9140217391304 32.5562173913044 14.5296739130435 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 1.56597627442645 WARNING: removing a crystallographic sphere since 46>45 max spheres are present Final number of output spheres is: 45 Number of polar spheres: 6 Number of nonpolar spheres: 29 Number of spheres that are near neither polar nor nonpolar receptor atoms: 10 Final number of spheres that are from crystallographic ligand: 45