usefragsph not on There are 35 ligand heavy atoms Ligand center of coords (x y z): 15.4026571428571 18.902 81.0754857142857 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1216 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 674 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 660 Number of spheres polar: 227, nonpolar: 263, out of current total: 660 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 5.43857 25.10320 11.38898 26.02266 71.16109 91.07428 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 233 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 193 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 168 Spheres center of coords (x y z): 15.3709836904762 19.5756986309524 79.7076669047619 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.00699423224953 Final number of output spheres is: 45 Number of polar spheres: 17 Number of nonpolar spheres: 20 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 35