usefragsph not on There are 35 ligand heavy atoms Ligand center of coords (x y z): 15.4026571428571 18.902 81.0754857142857 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1216 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 674 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 660 Number of spheres polar: 227, nonpolar: 263, out of current total: 660 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 5.43857 25.10320 11.38898 26.02266 71.16109 91.07428 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 386 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 328 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 300 Spheres center of coords (x y z): 14.9914780666667 18.9618829 79.8999568333334 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.2959822224321 Final number of output spheres is: 60 Number of polar spheres: 25 Number of nonpolar spheres: 25 Number of spheres that are near neither polar nor nonpolar receptor atoms: 10 Final number of spheres that are from crystallographic ligand: 35