usefragsph not on There are 47 ligand heavy atoms Ligand center of coords (x y z): 16.6093191489362 18.1862765957447 76.9759361702128 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1344 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 739 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 730 Number of spheres polar: 230, nonpolar: 300, out of current total: 730 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 6.62406 26.53244 10.54689 26.25387 67.10606 86.90912 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 253 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 202 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 47 Spheres center of coords (x y z): 16.6093191489362 18.1862765957447 76.9759361702128 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 1.34657119932545 WARNING: removing a crystallographic sphere since 47>45 max spheres are present WARNING: removing a crystallographic sphere since 46>45 max spheres are present Final number of output spheres is: 45 Number of polar spheres: 13 Number of nonpolar spheres: 23 Number of spheres that are near neither polar nor nonpolar receptor atoms: 9 Final number of spheres that are from crystallographic ligand: 45