usefragsph not on There are 17 ligand heavy atoms Ligand center of coords (x y z): 42.5781764705882 13.0657058823529 15.0034705882353 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 875 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 564 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 563 Number of spheres polar: 210, nonpolar: 183, out of current total: 563 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 32.59015 52.43520 3.06575 22.95114 6.90924 24.17131 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 194 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 166 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 149 Spheres center of coords (x y z): 41.4829261744967 10.4687399328859 17.1569210738255 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.32760333494376 Final number of output spheres is: 45 Number of polar spheres: 17 Number of nonpolar spheres: 21 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 17