usefragsph not on There are 43 ligand heavy atoms Ligand center of coords (x y z): 22.2935813953488 29.3823953488372 17.2979069767442 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1724 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 822 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 818 Number of spheres polar: 265, nonpolar: 400, out of current total: 818 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 12.29376 32.27140 19.54014 39.36138 8.05557 27.25673 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 447 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 383 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 329 Spheres center of coords (x y z): 22.5937296352584 30.5764576899696 17.8857656534954 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.39496117040756 Final number of output spheres is: 60 Number of polar spheres: 18 Number of nonpolar spheres: 38 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 43