usefragsph not on There are 20 ligand heavy atoms Ligand center of coords (x y z): 45.8668 13.81595 1.87765 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 950 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 549 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 547 Number of spheres polar: 162, nonpolar: 227, out of current total: 547 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 35.91058 55.68623 3.85418 23.81282 -6.84169 9.84750 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 310 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 270 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 257 Spheres center of coords (x y z): 46.6299021789883 11.8777088326848 0.0509110116731511 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.67966178686587 Final number of output spheres is: 60 Number of polar spheres: 24 Number of nonpolar spheres: 34 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 20