usefragsph not on There are 20 ligand heavy atoms Ligand center of coords (x y z): 33.0948 -29.74195 -2.5017 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 938 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 526 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 525 Number of spheres polar: 182, nonpolar: 209, out of current total: 525 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 23.10275 43.01300 -39.35000 -21.54500 -6.05479 6.44833 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 176 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 141 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 123 Spheres center of coords (x y z): 30.7322283739838 -30.2932042276423 0.264959105691057 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.47074286726313 Final number of output spheres is: 45 Number of polar spheres: 21 Number of nonpolar spheres: 18 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 20