usefragsph not on There are 37 ligand heavy atoms Ligand center of coords (x y z): 48.1642432432432 10.0800810810811 3.11108108108108 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1232 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 583 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 580 Number of spheres polar: 148, nonpolar: 243, out of current total: 580 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 38.24049 58.02626 0.08372 20.06031 -6.66258 11.03125 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 224 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 179 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 166 Spheres center of coords (x y z): 47.203246686747 9.72556602409639 0.729578373493975 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.68918855944966 Final number of output spheres is: 45 Number of polar spheres: 10 Number of nonpolar spheres: 25 Number of spheres that are near neither polar nor nonpolar receptor atoms: 10 Final number of spheres that are from crystallographic ligand: 37