usefragsph not on There are 27 ligand heavy atoms Ligand center of coords (x y z): 46.929 12.4107037037037 2.3032962962963 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1123 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 595 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 593 Number of spheres polar: 217, nonpolar: 229, out of current total: 593 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 37.05314 56.77482 2.41184 22.29486 -6.31670 10.17439 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 207 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 175 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 156 Spheres center of coords (x y z): 46.7288108974359 11.9364823717949 0.201253076923077 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.82708425442886 Final number of output spheres is: 45 Number of polar spheres: 13 Number of nonpolar spheres: 27 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 27