usefragsph not on
There are 27 ligand heavy atoms
Ligand center of coords (x y z): 46.929 12.4107037037037 2.3032962962963
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1123
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 595
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 593
Number of spheres polar: 217, nonpolar: 229, out of current total: 593
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 37.05314 56.77482 2.41184 22.29486 -6.31670 10.17439
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 314
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 268
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 241
Spheres center of coords (x y z): 46.7325400829876 11.9391738589212 0.455548257261411
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 4.83494797065565
Final number of output spheres is: 60
Number of polar spheres: 20
Number of nonpolar spheres: 31
Number of spheres that are near neither polar nor nonpolar receptor atoms: 9
Final number of spheres that are from crystallographic ligand: 27