usefragsph not on There are 18 ligand heavy atoms Ligand center of coords (x y z): 2.18327777777778 27.1887777777778 320.233052777778 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1411 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 951 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 949 Number of spheres polar: 273, nonpolar: 433, out of current total: 949 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -7.77707 12.16221 17.22042 37.17106 310.40604 327.85538 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 293 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 250 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 237 Spheres center of coords (x y z): 1.77738455696202 29.0601755696202 317.853672320675 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 7.06694435770067 Final number of output spheres is: 45 Number of polar spheres: 26 Number of nonpolar spheres: 17 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 18