DOCK version 3.5.54, compiled on 20120216 CPU, Date, and Time: node-3-11.c.bkslab.org 13-Mar-12 14:16:31 Solvation type: context-dependent ligand desolvation Internal Distance Clashes will be checked Receptor spheres: ../../sph/match2.sph Receptor cluster number(s): 1 Desolvation grid: ../../grids/solvmap_sev :dislim = 1.5000 maxnodes = 4 ratiom = 0.0000 minnodes = 3 :lbinsz = 0.4000 lovlap = 0.1000 sbinsz = 0.4000 sovlap = 0.1000 Input ligand: /raid3/people/mysinger/pxc/dude/original/dud_lig_gart_0001.db.gz DelPhi grid: ../../grids/rec+sph.phi vdW parms: ../../grids/vdw.parms.amb.mindock chemgrid prefix: ../../grids/chem resolution = 0.3300000 number of points = 1613560 a maximum of 1 bad contacts will be allowed for each orientation random seed = 777 natmin = 5 natmax = 100 nsav = 50000 300000 molecules may be searched in this run hydrogens always written out zooming will not be done trilinear interpolation is always done Orientation minimization: best conformation Simplex parameters: Max energy to minimize: 0.100E+16 Max step-size for translation (A): 0.20 Max step-size for euler angles: 5.00 Min energy change for restart (kcal/mol): 1.00 Energy convergence tolerance (kcal/mol): 0.10 Max number of iterations: 200 database version: 5.2 7 colors used in ligand database file 12 colors used in receptor sphere file ligand color positive 1 merged number = 1 ligand color negative 2 merged number = 2 ligand color acceptor 3 merged number = 3 ligand color donor 4 merged number = 4 ligand color ester_o 5 merged number = 5 ligand color amide_o 6 merged number = 6 ligand color neutral 7 merged number = 7 receptor color positive 1 merged number = 1 receptor color negative 2 merged number = 2 receptor color acceptor 3 merged number = 3 receptor color donor 4 merged number = 4 receptor color ester_o 5 merged number = 5 receptor color amide_o 6 merged number = 6 receptor color neutral 7 merged number = 7 receptor color not_neutral 8 merged number = 8 receptor color positive_or_donor 9 merged number = 9 receptor color negative_or_acceptor 10 merged number = 10 receptor color neutral_or_acceptor_or_donor 11 merged number = 11 receptor color donacc 12 merged number = 12 12 colors in merged ligand-sphere color table this is a run with labeled color matching: match positive negative match positive negative_or_acceptor match positive not_neutral match negative positive match negative positive_or_donor match negative not_neutral match donor acceptor match donor donacc match donor negative_or_acceptor match donor neutral_or_acceptor_or_donor match donor not_neutral match acceptor donor match acceptor donacc match acceptor positive_or_donor match acceptor neutral_or_acceptor_or_donor match acceptor not_neutral match neutral neutral match neutral neutral_or_acceptor_or_donor match ester_o donor match ester_o donacc match ester_o positive_or_donor match ester_o not_neutral match amide_o donor match amide_o donacc match amide_o positive_or_donor match amide_o not_neutral 26 chemical matches specified grid min 53.64600 2.564999 10.61300 grid max 95.64600 40.06500 45.11300 using cluster number: 1 output file: test.eel1.gz Receptor spheres: 45 0 0 0 0 0 38 non-zero colors in receptor sphere cluster cluster 1 with 45 spheres 9001 9002 9003 9004 9005 9006 9007 9008 9009 9010 9011 9012 9013 9014 9015 9016 9017 9018 9019 9020 9021 9022 9023 9024 9025 9026 9027 9028 9029 9030 9031 9032 9033 9034 9035 9036 9037 9038 9039 9040 9041 9042 9043 9044 9045 maximum receptor sphere-sphere distance 14.47567 mol# id_num matched nscored nhvy nconfs part.fcn Time E id_num nbr elect + vdW + polsol + apolsol = Total 1 C04617877 1374 1331819 31 11286 844.0 2.25 E C04617877 3 -15.22 -31.09 16.66 -1.97 -31.61 2 C04617877 1218 1737062 31 685 84.0 3.84 E C04617877 2 -15.63 -32.31 13.35 -1.89 -36.48 3 C03807018 979 704971 31 16740 257.0 1.21 E C03807018 3 -17.84 -30.86 11.66 -1.86 -38.90 4 C03807018 1229 2147134 31 793 976.0 4.06 E C03807018 2 -19.79 -24.85 15.57 -1.73 -30.81 5 C04617877 1380 1337599 31 11395 429.2 2.25 E C04617877 3 -7.08 -17.77 4.63 -1.02 -21.24 6 C04617877 1595 2304496 31 690 1278.6 5.11 E C04617877 2 -11.87 -16.88 9.19 -0.24 -19.81 7 C01533381 1204 576427 34 17388 303.5 0.97 E C01533381 3 -6.07 -15.92 4.79 -1.32 -18.51 8 C01533381 848 527654 34 1497 235.7 1.05 E C01533381 2 -11.09 -17.27 5.27 -0.85 -23.94 9 C04617881 1377 1186618 32 8613 677.0 2.28 E C04617881 3 -10.98 -12.73 7.39 -1.64 -17.96 10 C04617881 941 615606 32 566 324.3 1.39 E C04617881 2 -12.20 -19.90 14.91 -0.22 -17.40 11 C04617881 1377 1405858 32 9405 331.1 2.60 E C04617881 3 -17.65 -31.67 26.78 -1.44 -23.97 12 C04617881 1134 672107 32 636 578.0 1.60 E C04617881 2 -10.57 -31.99 24.48 -1.45 -19.53 13 C04617880 1377 1109958 32 8178 122.7 2.09 E C04617880 3 -19.74 -23.12 20.05 -2.48 -25.29 14 C04617880 980 569602 32 575 347.4 1.32 E C04617880 2 -10.10 -20.00 7.43 -0.30 -22.97 15 C04617880 1377 1419768 32 9504 354.0 2.62 E C04617880 3 -28.77 -36.70 21.57 -2.45 -46.35 16 C04617880 1447 954543 32 661 275.4 2.15 E C04617880 2 -30.87 -33.81 20.93 -2.52 -46.27 17 C01536966 1129 1227302 31 15228 480.3 1.95 E C01536966 3 -28.83 -23.45 28.59 -1.33 -25.03 18 C01536966 1575 2378810 31 726 423.4 5.00 E C01536966 2 -26.30 -34.73 32.68 -1.54 -29.89 19 C03807027 373 410909 30 19869 43.4 0.66 E C03807027 3 -35.45 -36.27 26.71 -1.87 -46.89 20 C03807027 1217 1842595 30 715 239.4 3.73 E C03807027 2 -17.80 -33.03 10.95 -1.59 -41.48 21 C04617880 1377 1065939 32 8062 636.0 2.01 E C04617880 3 -22.06 -12.38 16.66 -1.89 -19.67 22 C04617880 943 580137 32 563 215.9 1.33 E C04617880 2 -14.94 -14.58 9.17 -1.01 -21.36 23 C04617880 1377 1431132 32 9438 125.3 2.58 E C04617880 3 -31.82 -33.53 30.37 -2.05 -37.03 24 C04617880 1135 737646 32 650 14.9 1.57 E C04617880 2 -17.71 -30.62 19.93 -1.62 -30.02 25 C03807028 508 533934 31 21190 114.9 0.77 E C03807028 3 -34.74 -36.72 27.70 -1.93 -45.69 26 C03807028 1218 1889339 31 723 603.4 3.81 E C03807028 2 -17.63 -30.75 10.18 -1.76 -39.96 27 C04617881 1377 1219691 32 8344 867.7 2.19 E C04617881 3 -10.74 -17.88 9.84 -1.41 -20.20 28 C04617881 980 612802 32 567 520.3 1.30 E C04617881 2 -22.04 -14.65 13.89 -0.22 -23.03 29 C04617881 1377 1405629 32 9056 784.0 2.44 E C04617881 3 -39.77 -27.79 29.53 -1.91 -39.93 30 C04617881 1447 830693 32 640 612.0 1.85 E C04617881 2 -23.26 -34.37 24.83 -2.15 -34.95 31 C03807039 1204 1410380 30 19610 179.7 2.10 E C03807039 3 -22.01 -32.72 23.62 -1.99 -33.10 32 C03807039 1218 1861102 30 710 1132.5 3.40 E C03807039 2 -12.94 -17.37 4.88 -0.20 -25.64 33 C04617884 523 367460 32 4466 210.0 0.66 E C04617884 3 -28.23 -29.68 35.89 -2.14 -24.16 34 C04617884 943 535609 32 342 174.8 1.00 E C04617884 2 -14.75 -12.70 9.39 -0.80 -18.86 35 C04617884 523 518274 32 4725 232.1 0.88 E C04617884 3 -6.46 -29.89 17.38 -1.37 -20.34 36 C04617884 1134 552531 32 365 472.0 1.07 E C04617884 2 -7.11 -32.38 20.49 -1.53 -20.53 37 C04617884 523 384646 32 4378 210.0 0.67 E C04617884 3 -36.60 -30.86 30.23 -2.51 -39.75 38 C04617884 980 502848 32 348 10.0 0.94 E C04617884 2 -28.61 -29.27 26.50 -2.49 -33.87 39 C04617884 523 526986 32 4704 195.9 0.89 E C04617884 3 -8.35 -27.46 9.62 -1.82 -28.00 40 C04617884 1425 696464 32 364 528.0 1.35 E C04617884 2 -8.91 -29.95 12.39 -1.42 -27.89 41 C01539234 442 490201 32 19706 346.0 0.83 E C01539234 3 -8.10 -25.01 8.90 -1.12 -25.32 42 C01539234 1342 1493470 32 683 984.0 3.49 E C01539234 2 -17.61 -19.40 13.94 -1.95 -25.02 43 C01539234 808 710282 32 18036 18.0 1.21 E C01539234 3 -36.47 -34.18 24.64 -2.10 -48.10 44 C01539234 1218 1477309 32 756 90.9 3.44 E C01539234 2 -19.49 -32.81 12.69 -1.99 -41.60 45 C03807030 523 553537 31 20504 268.0 0.89 E C03807030 3 -33.35 -22.89 26.62 -2.19 -31.81 46 C03807030 1217 1809589 31 741 78.6 3.54 E C03807030 2 -17.85 -24.27 8.98 -1.75 -34.90 47 C04617883 523 363395 32 4761 30.0 0.63 E C04617883 3 -33.03 -27.44 31.84 -2.66 -31.29 48 C04617883 983 537477 32 354 329.9 1.02 E C04617883 2 -12.61 -17.63 7.18 -0.29 -23.35 49 C04617883 523 507519 32 4880 168.0 0.85 E C04617883 3 -14.35 -35.69 16.45 -2.27 -35.86 50 C04617883 1447 825261 32 377 224.0 1.53 E C04617883 2 -15.74 -35.30 14.07 -2.28 -39.25 51 C01544483 373 292302 31 6262 182.1 0.48 E C01544483 3 -24.97 -32.82 25.87 -2.19 -34.10 52 C01544483 983 564452 31 336 508.0 1.01 E C01544483 2 -25.33 -33.31 32.78 -2.10 -27.95 53 C01544483 373 382418 31 5796 149.0 0.61 E C01544483 3 -15.79 -29.78 12.03 -1.94 -35.49 54 C01544483 1447 877977 31 362 708.0 1.59 E C01544483 2 -26.15 -34.05 18.00 -2.00 -44.20 55 C01539498 1204 771947 32 2964 170.0 1.35 E C01539498 3 -9.96 -26.89 11.65 -1.87 -27.07 56 C01539498 980 582516 32 287 14.0 1.05 E C01539498 2 -21.98 -30.24 18.62 -2.25 -35.84 57 C01539498 1204 1122300 32 4644 636.5 1.89 E C01539498 3 -11.13 -32.43 10.68 -1.80 -34.67 58 C01539498 1447 738168 32 226 553.0 1.39 E C01539498 2 -12.98 -29.88 11.29 -1.71 -33.29 59 C04617883 523 346873 32 4646 97.3 0.60 E C04617883 3 -31.34 -23.50 38.34 -2.16 -18.65 60 C04617883 941 530063 32 357 278.7 1.01 E C04617883 2 -12.68 -15.79 10.38 0.16 -17.93 61 C04617883 523 507469 32 5250 217.5 0.86 E C04617883 3 -27.75 -22.75 31.20 -1.75 -21.05 62 C04617883 1134 643150 32 371 165.4 1.21 E C04617883 2 -7.06 -28.49 12.95 -2.60 -25.20 63 C03807036 373 472736 29 19580 260.9 0.69 E C03807036 3 -28.54 -33.52 27.72 -1.70 -36.04 64 C03807036 1218 1845890 29 814 1484.0 3.21 E C03807036 2 -13.73 -32.62 16.17 -1.23 -31.41 65 C03806973 373 298244 31 6272 80.0 0.51 E C03806973 3 -19.64 -31.46 14.99 -1.97 -38.08 66 C03806973 663 464240 31 340 275.0 0.88 E C03806973 2 -20.28 -34.44 16.50 -2.08 -40.31 67 C03806973 373 389886 31 5775 154.1 0.64 E C03806973 3 -11.31 -27.11 9.08 -1.57 -30.91 68 C03806973 1848 1014693 31 399 206.2 1.95 E C03806973 2 -24.39 -28.30 18.72 -1.77 -35.74 69 C03806979 529 318050 32 1944 240.1 0.67 E C03806979 3 -5.24 -20.89 7.59 -1.51 -20.05 70 C03806979 663 280853 32 216 214.8 0.64 E C03806979 2 -13.13 -10.72 5.00 -0.64 -19.49 71 C03806979 529 400548 32 2568 276.1 0.83 E C03806979 3 -14.79 -16.69 15.14 -2.09 -18.44 72 C03806979 1848 580191 32 263 361.7 1.40 E C03806979 2 -9.32 -16.82 4.70 -0.53 -21.97 73 C04617874 1174 851850 34 27120 54.4 1.44 E C04617874 3 -12.56 -12.77 3.30 -0.34 -22.36 74 C04617874 1322 916365 34 1172 378.2 1.90 E C04617874 2 -17.08 -16.45 6.44 0.74 -26.34 75 C04617874 1174 947884 34 16728 159.5 1.54 E C04617874 3 -18.06 -34.97 8.24 -0.36 -45.16 76 C04617874 754 624628 34 736 294.0 1.30 E C04617874 2 -12.77 -28.58 7.58 -0.14 -33.90 77 C03806979 1204 770410 32 3300 176.0 1.39 E C03806979 3 -10.28 -28.68 11.91 -1.95 -29.00 78 C03806979 663 447732 32 274 56.9 0.85 E C03806979 2 -19.86 -31.02 17.01 -2.19 -36.07 79 C03806979 1204 1147644 32 4191 710.0 1.99 E C03806979 3 -13.04 -26.40 8.15 -1.64 -32.92 80 C03806979 1847 1028202 32 241 135.6 2.03 E C03806979 2 -11.49 -29.64 8.79 -1.65 -33.99 81 C03806987 373 281500 31 6870 178.0 0.46 E C03806987 3 -35.14 -34.48 29.37 -2.17 -42.43 82 C03806987 983 604711 31 352 15.0 1.06 E C03806987 2 -19.32 -36.36 16.72 -2.01 -40.96 83 C03806987 373 378670 31 6048 178.0 0.62 E C03806987 3 -11.40 -31.12 12.60 -1.34 -31.25 84 C03806987 1425 786651 31 361 554.1 1.44 E C03806987 2 -14.41 -28.18 10.78 -1.51 -33.32 85 C04617874 1174 869291 34 23936 330.5 1.47 E C04617874 3 -10.55 -11.39 3.10 -0.34 -19.17 86 C04617874 1361 979509 34 1074 77.4 2.05 E C04617874 2 -17.36 -20.35 17.26 0.26 -20.18 87 C04617874 1174 910622 34 16677 479.4 1.49 E C04617874 3 -12.71 -33.30 13.01 -0.10 -33.10 88 C04617874 899 740926 34 739 368.0 1.51 E C04617874 2 -14.50 -24.60 12.87 0.79 -25.44 89 C04617875 1204 1528238 31 12567 88.4 2.27 E C04617875 3 -37.51 -35.51 31.61 -2.33 -43.73 90 C04617875 1575 2468379 31 819 946.2 4.37 E C04617875 2 -19.08 -35.21 17.72 -2.12 -38.69 91 C03806979 1204 787298 32 3752 230.7 1.43 E C03806979 3 -7.14 -28.06 17.71 -1.55 -19.04 92 C03806979 764 501175 32 273 80.0 0.95 E C03806979 2 -24.64 -32.29 34.06 -1.95 -24.82 93 C03806979 1204 1116636 32 4257 580.1 1.95 E C03806979 3 -10.92 -35.43 23.07 -2.11 -25.39 94 C03806979 1785 925717 32 242 794.4 1.85 E C03806979 2 -6.14 -29.59 16.80 -1.26 -20.19 95 C04617875 1204 1510387 31 12672 616.1 2.24 E C04617875 3 -17.16 -34.07 22.89 -1.86 -30.20 96 C04617875 1498 2351791 31 820 803.6 4.26 E C04617875 2 -23.53 -31.78 30.26 -1.96 -27.01 EOF: /raid3/people/mysinger/pxc/dude/original/dud_lig_gart_0001.db.gz end of file encountered total minimization steps = 4061575 for debugging, time = 168.0700 solvation corrected scores: (a) 1 C01539234 score: -48.104 nathvy = 32 nconfs = 18036 2 C03807027 score: -46.886 nathvy = 30 nconfs = 19869 3 C04617880 score: -46.352 nathvy = 32 nconfs = 9504 4 C04617880 score: -46.274 nathvy = 32 nconfs = 661 5 C03807028 score: -45.692 nathvy = 31 nconfs = 21190 6 C04617874 score: -45.155 nathvy = 34 nconfs = 16728 7 C01544483 score: -44.199 nathvy = 31 nconfs = 362 8 C04617875 score: -43.735 nathvy = 31 nconfs = 12567 9 C03806987 score: -42.428 nathvy = 31 nconfs = 6870 10 C01539234 score: -41.598 nathvy = 32 nconfs = 756 11 C03807027 score: -41.478 nathvy = 30 nconfs = 715 12 C03806987 score: -40.960 nathvy = 31 nconfs = 352 13 C03806973 score: -40.306 nathvy = 31 nconfs = 340 14 C03807028 score: -39.958 nathvy = 31 nconfs = 723 15 C04617881 score: -39.933 nathvy = 32 nconfs = 9056 16 C04617884 score: -39.745 nathvy = 32 nconfs = 4378 17 C04617883 score: -39.246 nathvy = 32 nconfs = 377 18 C03807018 score: -38.899 nathvy = 31 nconfs = 16740 19 C04617875 score: -38.687 nathvy = 31 nconfs = 819 20 C03806973 score: -38.077 nathvy = 31 nconfs = 6272 21 C04617880 score: -37.030 nathvy = 32 nconfs = 9438 22 C04617877 score: -36.479 nathvy = 31 nconfs = 685 23 C03806979 score: -36.067 nathvy = 32 nconfs = 274 24 C03807036 score: -36.038 nathvy = 29 nconfs = 19580 25 C04617883 score: -35.857 nathvy = 32 nconfs = 4880 26 C01539498 score: -35.843 nathvy = 32 nconfs = 287 27 C03806973 score: -35.743 nathvy = 31 nconfs = 399 28 C01544483 score: -35.489 nathvy = 31 nconfs = 5796 29 C04617881 score: -34.948 nathvy = 32 nconfs = 640 30 C03807030 score: -34.898 nathvy = 31 nconfs = 741 31 C01539498 score: -34.675 nathvy = 32 nconfs = 4644 32 C01544483 score: -34.103 nathvy = 31 nconfs = 6262 33 C03806979 score: -33.986 nathvy = 32 nconfs = 241 34 C04617874 score: -33.905 nathvy = 34 nconfs = 736 35 C04617884 score: -33.873 nathvy = 32 nconfs = 348 36 C03806987 score: -33.315 nathvy = 31 nconfs = 361 37 C01539498 score: -33.286 nathvy = 32 nconfs = 226 38 C03807039 score: -33.102 nathvy = 30 nconfs = 19610 39 C04617874 score: -33.101 nathvy = 34 nconfs = 16677 40 C03806979 score: -32.919 nathvy = 32 nconfs = 4191 41 C03807030 score: -31.811 nathvy = 31 nconfs = 20504 42 C04617877 score: -31.612 nathvy = 31 nconfs = 11286 43 C03807036 score: -31.413 nathvy = 29 nconfs = 814 44 C04617883 score: -31.294 nathvy = 32 nconfs = 4761 45 C03806987 score: -31.250 nathvy = 31 nconfs = 6048 46 C03806973 score: -30.909 nathvy = 31 nconfs = 5775 47 C03807018 score: -30.806 nathvy = 31 nconfs = 793 48 C04617875 score: -30.197 nathvy = 31 nconfs = 12672 49 C04617880 score: -30.019 nathvy = 32 nconfs = 650 50 C01536966 score: -29.892 nathvy = 31 nconfs = 726 51 C03806979 score: -28.999 nathvy = 32 nconfs = 3300 52 C04617884 score: -28.002 nathvy = 32 nconfs = 4704 53 C01544483 score: -27.949 nathvy = 31 nconfs = 336 54 C04617884 score: -27.886 nathvy = 32 nconfs = 364 55 C01539498 score: -27.072 nathvy = 32 nconfs = 2964 56 C04617875 score: -27.009 nathvy = 31 nconfs = 820 57 C04617874 score: -26.339 nathvy = 34 nconfs = 1172 58 C03807039 score: -25.638 nathvy = 30 nconfs = 710 59 C04617874 score: -25.441 nathvy = 34 nconfs = 739 60 C03806979 score: -25.390 nathvy = 32 nconfs = 4257 61 C01539234 score: -25.325 nathvy = 32 nconfs = 19706 62 C04617880 score: -25.287 nathvy = 32 nconfs = 8178 63 C04617883 score: -25.195 nathvy = 32 nconfs = 371 64 C01536966 score: -25.031 nathvy = 31 nconfs = 15228 65 C01539234 score: -25.021 nathvy = 32 nconfs = 683 66 C03806979 score: -24.820 nathvy = 32 nconfs = 273 67 C04617884 score: -24.160 nathvy = 32 nconfs = 4466 68 C04617881 score: -23.975 nathvy = 32 nconfs = 9405 69 C01533381 score: -23.939 nathvy = 34 nconfs = 1497 70 C04617883 score: -23.345 nathvy = 32 nconfs = 354 71 C04617881 score: -23.027 nathvy = 32 nconfs = 567 72 C04617880 score: -22.966 nathvy = 32 nconfs = 575 73 C04617874 score: -22.358 nathvy = 34 nconfs = 27120 74 C03806979 score: -21.971 nathvy = 32 nconfs = 263 75 C04617880 score: -21.365 nathvy = 32 nconfs = 563 76 C04617877 score: -21.237 nathvy = 31 nconfs = 11395 77 C04617883 score: -21.051 nathvy = 32 nconfs = 5250 78 C04617884 score: -20.527 nathvy = 32 nconfs = 365 79 C04617884 score: -20.339 nathvy = 32 nconfs = 4725 80 C04617881 score: -20.200 nathvy = 32 nconfs = 8344 81 C03806979 score: -20.186 nathvy = 32 nconfs = 242 82 C04617874 score: -20.184 nathvy = 34 nconfs = 1074 83 C03806979 score: -20.046 nathvy = 32 nconfs = 1944 84 C04617877 score: -19.805 nathvy = 31 nconfs = 690 85 C04617880 score: -19.672 nathvy = 32 nconfs = 8062 86 C04617881 score: -19.535 nathvy = 32 nconfs = 636 87 C03806979 score: -19.494 nathvy = 32 nconfs = 216 88 C04617874 score: -19.171 nathvy = 34 nconfs = 23936 89 C03806979 score: -19.040 nathvy = 32 nconfs = 3752 90 C04617884 score: -18.864 nathvy = 32 nconfs = 342 91 C04617883 score: -18.652 nathvy = 32 nconfs = 4646 92 C01533381 score: -18.515 nathvy = 34 nconfs = 17388 93 C03806979 score: -18.435 nathvy = 32 nconfs = 2568 94 C04617881 score: -17.955 nathvy = 32 nconfs = 8613 95 C04617883 score: -17.929 nathvy = 32 nconfs = 357 96 C04617881 score: -17.400 nathvy = 32 nconfs = 566 Date and Time: 13-Mar-12 14:19:42 elapsed time (sec): 168.2300