usefragsph not on There are 38 ligand heavy atoms Ligand center of coords (x y z): -6.04826315789474 56.0331315789474 15.7479210526316 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 2045 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1209 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1207 Number of spheres polar: 326, nonpolar: 574, out of current total: 1207 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -16.04495 3.93363 46.07149 66.01275 6.17662 25.71813 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 411 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 338 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 326 Spheres center of coords (x y z): -6.30007963190184 56.4345064417178 19.4135730674847 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.13128081279941 Final number of output spheres is: 45 Number of polar spheres: 18 Number of nonpolar spheres: 23 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 38