usefragsph not on There are 38 ligand heavy atoms Ligand center of coords (x y z): 51.2140789473684 46.9846315789474 27.0181842105263 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1237 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 749 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 749 Number of spheres polar: 312, nonpolar: 302, out of current total: 749 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 42.17648 61.04892 37.10302 56.93056 17.03701 36.95324 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 251 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 206 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 190 Spheres center of coords (x y z): 51.7755337894737 46.9179279473684 25.5755468947368 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.77344693473397 Final number of output spheres is: 45 Number of polar spheres: 20 Number of nonpolar spheres: 20 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 38