usefragsph not on There are 38 ligand heavy atoms Ligand center of coords (x y z): -6.03326315789474 56.0959736842105 15.4303421052632 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 2113 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1130 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1130 Number of spheres polar: 296, nonpolar: 571, out of current total: 1130 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -16.02106 3.91428 46.09913 66.08289 5.70067 25.41892 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 388 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 324 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 311 Spheres center of coords (x y z): -6.18892363344051 56.824938392283 18.643001607717 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.07716511862142 Final number of output spheres is: 45 Number of polar spheres: 18 Number of nonpolar spheres: 26 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 38