Running Epik version     2.1209
Epik. Copyright Schrodinger, LLC. All rights reserved.

Input file name:                        A.mae
Output file name:                       B.mae
Structure adjustment calculation requested.
  Target pH set to 7.000
pHt tolerance set to 1.000000e+00
Epik minmium tautomer probability set to 2.000000e-01

Adjusting structures for pH 7.000000e+00 and minimum probability 1.000000e-01
Solvent model name:                     water
Using Incremental parameter file version: 1.0004
Jobcontrol is not being used for this specific Epik calculation.
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Processing Input Structure #1
        Title: TEMP00000001
                                              Calculated pKas
                                                 Conjugate
                                          Atom   Acid/Base  pKa
. . . . . . . . . . . . . . . . . . . . . . .
Variation: 1
                                            56   Conj_Acid  9.46
                                            57   Conj_Acid  9.46
                                            58   Conj_Acid 12.91
                                            41   Conj_Base  3.50
                                            38   Conj_Base  5.00
                                            20   Conj_Base  0.30
                                            21   Conj_Base  1.65
                                            17   Conj_Acid 11.38
                                            14   Conj_Base  3.38
                                            52   Conj_Acid 13.83
                                            53   Conj_Acid 13.83
                                            19   Conj_Base -0.41
                                            30   Conj_Base -0.77
                                            54   Conj_Acid 11.88
                                            55   Conj_Acid 11.88
 pKa penalty:                                 0.01 kcal/mol
     Charging penalty:                        0.01 kcal/mol
     Neutralization penalty:                  0.00 kcal/mol
 Overall Penalty (tautomerization included): -0.00 kcal/mol
 Total Charge: -2
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