usefragsph not on There are 38 ligand heavy atoms Ligand center of coords (x y z): 74.6446052631579 22.7348684210526 31.467 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1099 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 642 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 636 Number of spheres polar: 213, nonpolar: 314, out of current total: 636 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 64.66666 84.54500 12.86986 32.73407 21.51030 40.61091 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 364 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 321 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 288 Spheres center of coords (x y z): 73.6887742708333 21.3444795486111 32.1897397569445 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.69476381910994 Final number of output spheres is: 60 Number of polar spheres: 30 Number of nonpolar spheres: 23 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 38