There are 38 ligand heavy atoms Ligand center of coords (x y z): 74.6446052631579 22.7348684210526 31.467 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 12680 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (12 angstroms): 9385 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 9385 Number of spheres polar: 5852, nonpolar: 2786, out of current total: 9385 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 62.65480 86.64380 10.76180 34.73160 19.46780 43.40080 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 1165 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 667 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 580 Spheres center of coords (x y z): 74.3127051724138 22.9772675862069 34.1420737931034 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 8.04117028940095 Final number of output spheres is: 120 Number of polar spheres: 76 Number of nonpolar spheres: 36 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 38