usefragsph not on There are 17 ligand heavy atoms Ligand center of coords (x y z): 33.4326470588235 22.4271176470588 27.2591176470588 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1073 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 700 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 698 Number of spheres polar: 374, nonpolar: 264, out of current total: 698 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 23.49791 43.41809 13.10500 32.20319 17.31664 37.25885 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 317 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 230 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 159 Spheres center of coords (x y z): 34.5475666666667 24.3588550943396 30.2951449056604 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.47279369087785 Final number of output spheres is: 60 Number of polar spheres: 26 Number of nonpolar spheres: 27 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 17