usefragsph not on
There are 19 ligand heavy atoms
Ligand center of coords (x y z): 40.7896842105263 3.07368421052632 26.3957894736842
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1246
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 789
WARNING: removing a crystallographic sphere that is distance 1.15944857583249 angstroms from closest receptor atom
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 788
Number of spheres polar: 247, nonpolar: 373, out of current total: 788
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 31.76115 50.69125 -6.58700 12.82592 16.40578 36.24398
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 256
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 204
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 181
Spheres center of coords (x y z): 43.7139162430939 5.33283961325967 24.4241656906077
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.91196623009119
Final number of output spheres is: 45
Number of polar spheres: 12
Number of nonpolar spheres: 23
Number of spheres that are near neither polar nor nonpolar receptor atoms: 10
Final number of spheres that are from crystallographic ligand: 18