usefragsph not on There are 14 ligand heavy atoms Ligand center of coords (x y z): 33.229 21.6253571428571 26.7566428571429 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 894 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 546 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 546 Number of spheres polar: 319, nonpolar: 145, out of current total: 546 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 23.23895 43.03336 18.25300 31.60488 16.77604 36.72374 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 248 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 191 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 117 Spheres center of coords (x y z): 34.8891022222222 23.596407008547 28.9863992307692 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.05451219647492 Final number of output spheres is: 60 Number of polar spheres: 26 Number of nonpolar spheres: 23 Number of spheres that are near neither polar nor nonpolar receptor atoms: 11 Final number of spheres that are from crystallographic ligand: 14