usefragsph not on There are 6 ligand heavy atoms Ligand center of coords (x y z): 32.4526666666667 20.5983333333333 25.4526666666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 715 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 590 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 590 Number of spheres polar: 345, nonpolar: 186, out of current total: 590 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 24.11032 42.44040 16.48600 30.24442 16.53981 35.43415 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 248 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 211 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 147 Spheres center of coords (x y z): 33.8600429931973 23.8044724489796 29.2494381632653 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.75569292964743 Final number of output spheres is: 60 Number of polar spheres: 31 Number of nonpolar spheres: 22 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 6