usefragsph not on There are 19 ligand heavy atoms Ligand center of coords (x y z): 33.8334210526316 22.5088947368421 27.5093157894737 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1078 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 708 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 708 Number of spheres polar: 404, nonpolar: 242, out of current total: 708 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 24.17558 43.70043 16.19905 32.47243 17.55536 37.50771 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 295 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 251 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 188 Spheres center of coords (x y z): 35.5746259574468 24.3623522340426 30.3964990425532 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.48449997361731 Final number of output spheres is: 60 Number of polar spheres: 28 Number of nonpolar spheres: 26 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 19