usefragsph not on There are 18 ligand heavy atoms Ligand center of coords (x y z): 33.4161111111111 22.5249444444444 27.5720555555556 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1122 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 705 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 705 Number of spheres polar: 419, nonpolar: 236, out of current total: 705 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 23.62568 43.40752 12.56278 32.50679 17.59281 37.54814 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 312 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 238 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 183 Spheres center of coords (x y z): 35.3662786338798 24.2306223497268 30.3179747540984 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.73894425081595 Final number of output spheres is: 60 Number of polar spheres: 33 Number of nonpolar spheres: 20 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 18