usefragsph not on There are 18 ligand heavy atoms Ligand center of coords (x y z): 33.4339444444444 22.5161666666667 27.4226666666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1137 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 772 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 772 Number of spheres polar: 482, nonpolar: 236, out of current total: 772 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 23.78118 43.24210 13.40978 32.51345 17.50181 37.34192 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 300 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 244 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 183 Spheres center of coords (x y z): 35.4673091803279 24.2643055191257 30.2856335519126 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.63713622997991 Final number of output spheres is: 60 Number of polar spheres: 36 Number of nonpolar spheres: 19 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 18