usefragsph not on There are 21 ligand heavy atoms Ligand center of coords (x y z): 33.2602857142857 23.2040952380952 28.0010476190476 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1290 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 758 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 758 Number of spheres polar: 424, nonpolar: 282, out of current total: 758 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 23.28050 43.24759 14.02243 33.11120 18.01969 37.97252 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 349 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 278 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 209 Spheres center of coords (x y z): 35.5084374641148 24.5476513875598 30.6613393779904 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.74555508881378 Final number of output spheres is: 60 Number of polar spheres: 27 Number of nonpolar spheres: 28 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 21