usefragsph not on There are 18 ligand heavy atoms Ligand center of coords (x y z): 33.5942222222222 22.4517222222222 27.4972777777778 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1214 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 747 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 747 Number of spheres polar: 410, nonpolar: 264, out of current total: 747 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 23.93720 43.50667 16.35843 32.38726 17.61924 37.46743 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 194 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 138 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 98 Spheres center of coords (x y z): 35.3530685714286 24.1332976530612 30.1266431632653 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.46437967590047 Final number of output spheres is: 45 Number of polar spheres: 23 Number of nonpolar spheres: 18 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 18